If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 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'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ), 'gf_id' => 'HOM05D000831', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000831' ), 'data_identifier' => 'HOM05D000831', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000831', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '717', 'num_species' => '86' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p24360' => 'bna', 'A06p19930' => 'bna', 'A09p32880' => 'bna', 'A09p32890' => 'bna', 'A09p32920' => 'bna', 'Aa31LG6G7850' => 'aar', 'Aa31LG9G11730' => 'aar', 'Aa31sc21G130' => 'aar', 'Actinidia09906' => 'ach', 'Actinidia12460' => 'ach', 'Actinidia12461' => 'ach', 'Actinidia12462' => 'ach', 'Actinidia12463' => 'ach', 'Actinidia12464' => 'ach', 'Ah.04g165350' => 'amhyb', 'Ah.04g165360' => 'amhyb', 'Ah.06g183430' => 'amhyb', 'Ah.06g183450' => 'amhyb', 'Ah.06g183460' => 'amhyb', 'Ah.06g183470' => 'amhyb', 'Ah.06g183490' => 'amhyb', 'AL1G47760' => 'aly', 'AL6G44094' => 'aly', 'AL6G44110' => 'aly', 'AL8G14930' => 'aly', 'Aqoxy1G03902' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14BHD7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31QCP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB42RH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWD7UL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RSD90X' => 'arhy', 'AT4G10265' => 'ath', 'AT4G10270' => 'ath', 'Atru.chr10.2403' => 'acertr', 'Atru.chr2.2924' => 'acertr', 'Atru.chr2.2925' => 'acertr', 'Atru.chr6.3081' => 'acertr', 'Atru.chr6.3082' => 'acertr', 'AUR62015587' => 'cqu', 'AUR62015588' => 'cqu', 'AUR62029297' => 'cqu', 'AUR62029299' => 'cqu', 'AUR62029300' => 'cqu', 'AUR62029301' => 'cqu', 'BcaB01g00888' => 'bca', 'BcaB01g00890' => 'bca', 'BcaB05g23911' => 'bca', 'BcaB07g32972' => 'bca', 'BcaB07g32973' => 'bca', 'BcaB07g32975' => 'bca', 'BcaB07g32979' => 'bca', 'BcaC01g01784' => 'bca', 'BcaC04g23198' => 'bca', 'BcaC08g43861' => 'bca', 'BcaC08g43865' => 'bca', 'BcaC08g43866' => 'bca', 'BcaC08g43868' => 'bca', 'BcaC08g43871' => 'bca', 'BolC3t19487H' => 'bol', 'BolC5t32539H' => 'bol', 'BolC6t36401H' => 'bol', 'BolC6t36406H' => 'bol', 'BolC6t36409H' => 'bol', 'BolC9t54010H' => 'bol', 'BraA05t21329Z' => 'bra', 'BraA06t25076Z' => 'bra', 'BraA09t38823Z' => 'bra', 'BraA09t38829Z' => 'bra', 'BraA09t38830Z' => 'bra', 'BraA09t38831Z' => 'bra', 'BraA09t38833Z' => 'bra', 'BraA09t38834Z' => 'bra', 'C03p71900' => 'bna', 'C06p12460' => 'bna', 'C06p12510' => 'bna', 'C06p12540' => 'bna', 'CAN.G1476.1' => 'can', 'CAN.G153.21' => 'can', 'CAN.G157.2' => 'can', 'CAN.G162.110' => 'can', 'CAN.G170.27' => 'can', 'CAN.G363.11' => 'can', 'CAN.G508.11' => 'can', 'CAN.G508.3' => 'can', 'CAN.G508.4' => 'can', 'CAN.G508.5' => 'can', 'CAN.G508.6' => 'can', 'CAN.G508.7' => 'can', 'CAN.G508.8' => 'can', 'CAN.G508.9' => 'can', 'CAN.G574.3' => 'can', 'CAN.G6902.1' => 'can', 'CAN.G80.15' => 'can', 'CANSAT11G0426' => 'cansat', 'CANSAT11G0733' => 'cansat', 'CANSAT11G1378' => 'cansat', 'CANSAT11G1836' => 'cansat', 'CANSAT11G1852' => 'cansat', 'CANSAT11G2478' => 'cansat', 'CARHR032790' => 'chi', 'CARHR032800' => 'chi', 'CARHR256440' => 'chi', 'CARHR256510' => 'chi', 'CARHR256560' => 'chi', 'CARHR256590' => 'chi', 'Carub.0001s3150' => 'cru', 'Carub.0001s3156' => 'cru', 'Carub.0001s3157' => 'cru', 'Carub.0001s3178' => 'cru', 'Carub.0001s3182' => 'cru', 'Carub.0001s3183' => 'cru', 'Carub.0001s3184' => 'cru', 'Carub.0006s2883' => 'cru', 'Ca_01539_v3' => 'car', 'Ca_01541_v3' => 'car', 'Ca_01542_v3' => 'car', 'Ca_01543_v3' => 'car', 'Ca_01797_v3' => 'car', 'Ca_13884_v3' => 'car', 'Ca_20704_v3' => 'car', 'Cc00_g31440' => 'ccan', 'Cc05_g06120' => 'ccan', 'Cc05_g06130' => 'ccan', 'Cc05_g06140' => 'ccan', 'Cc05_g06150' => 'ccan', 'Cc05_g06160' => 'ccan', 'Cc05_g06170' => 'ccan', 'Cfa014531' => 'cfa', 'Cfa014532' => 'cfa', 'Cfa014533' => 'cfa', 'Cfa014535' => 'cfa', 'Cfa014536' => 'cfa', 'Cfa014537' => 'cfa', 'Cfa014538' => 'cfa', 'Cfa014539' => 'cfa', 'Cfa020494' => 'cfa', 'Cfa020496' => 'cfa', 'Ciclev10010020m.g' => 'ccl', 'Ciclev10010740m.g' => 'ccl', 'Ciclev10017298m.g' => 'ccl', 'Ciclev10017300m.g' => 'ccl', 'Ciclev10017315m.g' => 'ccl', 'Ciclev10017327m.g' => 'ccl', 'Ciclev10017345m.g' => 'ccl', 'Ciclev10017349m.g' => 'ccl', 'Ciclev10017642m.g' => 'ccl', 'CiPaw.03G168500' => 'cil', 'CiPaw.03G168600' => 'cil', 'CiPaw.03G168700' => 'cil', 'CiPaw.03G168800' => 'cil', 'CiPaw.03G168900' => 'cil', 'CiPaw.03G169000' => 'cil', 'CiPaw.03G169100' => 'cil', 'CiPaw.03G169200' => 'cil', 'CiPaw.03G169300' => 'cil', 'CiPaw.03G169400' => 'cil', 'CiPaw.10G137800' => 'cil', 'CiPaw.11G177700' => 'cil', 'CiPaw.11G177900' => 'cil', 'ClCG00G002930' => 'cla', 'ClCG02G001320' => 'cla', 'ClCG02G001330' => 'cla', 'ClCG02G001340' => 'cla', 'ClCG10G006440' => 'cla', 'COL.COLO4_09491' => 'col', 'COL.COLO4_09492' => 'col', 'COL.COLO4_09493' => 'col', 'COL.COLO4_09494' => 'col', 'COL.COLO4_09495' => 'col', 'COL.COLO4_13649' => 'col', 'COL.COLO4_13651' => 'col', 'COL.COLO4_13652' => 'col', 'COL.COLO4_13653' => 'col', 'COL.COLO4_13654' => 'col', 'Cpa.g.sc12.24' => 'cpa', 'Cpa.g.sc12.25' => 'cpa', 'Cpa.g.sc12.26' => 'cpa', 'Cpa.g.sc12.27' => 'cpa', 'Cpa.g.sc12.28' => 'cpa', 'Cpa.g.sc34.82' => 'cpa', 'Cpa.g.sc34.83' => 'cpa', 'Cpa.g.sc34.85' => 'cpa', 'CsaV3_3G005920' => 'csa', 'CsaV3_7G004090' => 'csa', 'CsaV3_7G004100' => 'csa', 'CsaV3_7G004110' => 'csa', 'CSS0003063' => 'camsi', 'CSS0007378' => 'camsi', 'CSS0007475' => 'camsi', 'CSS0014453' => 'camsi', 'CSS0015806' => 'camsi', 'CSS0018979' => 'camsi', 'CSS0022159' => 'camsi', 'CSS0022903' => 'camsi', 'CSS0026265' => 'camsi', 'CSS0027845' => 'camsi', 'CSS0029956' => 'camsi', 'CSS0036635' => 'camsi', 'CSS0037125' => 'camsi', 'CSS0040678' => 'camsi', 'CSS0047300' => 'camsi', 'CSS0048593' => 'camsi', 'CSS0049002' => 'camsi', 'DCAR_009715' => 'dca', 'DCAR_009717' => 'dca', 'DCAR_009718' => 'dca', 'DCAR_009720' => 'dca', 'DCAR_009721' => 'dca', 'DCAR_009722' => 'dca', 'DCAR_022492' => 'dca', 'Dinv13827' => 'din', 'Dinv13828' => 'din', 'Dinv15499' => 'din', 'Duzib052G0973' => 'dzi', 'Duzib052G1017' => 'dzi', 'Duzib132G0142' => 'dzi', 'Duzib170G0486' => 'dzi', 'Duzib213G0034' => 'dzi', 'Duzib213G0223' => 'dzi', 'Duzib213G0241' => 'dzi', 'Duzib213G0288' => 'dzi', 'Duzib213G0328' => 'dzi', 'Duzib213G0402' => 'dzi', 'Duzib213G0527' => 'dzi', 'Duzib248G0958' => 'dzi', 'Duzib268G0103' => 'dzi', 'Duzib268G1469' => 'dzi', 'ECA246G0084' => 'eca', 'ECA246G1003' => 'eca', 'ECA246G2039' => 'eca', 'ECA246G2526' => 'eca', 'ECA246G4925' => 'eca', 'EL10Ac4g08043' => 'bvu', 'EL10Ac4g08044' => 'bvu', 'EL10As1g23065' => 'bvu', 'Eucgr.F01071' => 'egr', 'Eucgr.F01072' => 'egr', 'Eucgr.F03361' => 'egr', 'Eucgr.F03362' => 'egr', 'Eucgr.K00906' => 'egr', 'Eucgr.K00907' => 'egr', 'Eucgr.K00908' => 'egr', 'Eucgr.K00909' => 'egr', 'Eucgr.K00910' => 'egr', 'FAN02G3389' => 'fan', 'FAN02G4108' => 'fan', 'FAN05G2895' => 'fan', 'FAN09G0364' => 'fan', 'FAN11G3132' => 'fan', 'FAN14G0972' => 'fan', 'FAN14G1854' => 'fan', 'FAN14G5044' => 'fan', 'FAN21G3151' => 'fan', 'FAN21G3169' => 'fan', 'FAN25G0210' => 'fan', 'FvH4_2g25630' => 'fve', 'FvH4_3g21130' => 'fve', 'FvH4_6g44460' => 'fve', 'FvH4_6g44461' => 'fve', 'FvH4_6g44470' => 'fve', 'Glyma.03G117200' => 'gma', 'Glyma.04G147900' => 'gma', 'Glyma.06G297600' => 'gma', 'Glyma.06G297800' => 'gma', 'Glyma.06G297900' => 'gma', 'Glyma.06G298600' => 'gma', 'Glyma.06G298700' => 'gma', 'Glyma.06G298800' => 'gma', 'Glyma.06G298900' => 'gma', 'Glyma.06G299000' => 'gma', 'Glyma.12G107300' => 'gma', 'Glyma.12G200400' => 'gma', 'Glyma.12G200500' => 'gma', 'Glyma.12G200600' => 'gma', 'Glyma.12G200700' => 'gma', 'Glyma.12G200800' => 'gma', 'Glyma.12G218300' => 'gma', 'Glyma.12G218400' => 'gma', 'Glyma.13G282200' => 'gma', 'Glyma.13G282400' => 'gma', 'Glyma.13G301400' => 'gma', 'Glyma.13G301500' => 'gma', 'Glyma.13G301600' => 'gma', 'Glyma.13G301700' => 'gma', 'Glyma.13G301800' => 'gma', 'Glyma.13G301900' => 'gma', 'Glyma.15G276600' => 'gma', 'Glyma.18G202300' => 'gma', 'Glyma.U031111' => 'gma', 'Glyma.U031211' => 'gma', 'Gohir.A01G069300' => 'ghi', 'Gohir.A01G069400' => 'ghi', 'Gohir.A03G160100' => 'ghi', 'Gohir.A03G160200' => 'ghi', 'Gohir.A03G160300' => 'ghi', 'Gohir.A03G160400' => 'ghi', 'Gohir.A03G160500' => 'ghi', 'Gohir.A13G143200' => 'ghi', 'Gohir.D01G056800' => 'ghi', 'Gohir.D01G056825' => 'ghi', 'Gohir.D02G183300' => 'ghi', 'Gohir.D02G183400' => 'ghi', 'Gohir.D02G183500' => 'ghi', 'Gohir.D02G183700' => 'ghi', 'Gohir.D02G183800' => 'ghi', 'Gohir.D05G362350' => 'ghi', 'Gohir.D13G147900' => 'ghi', 'Gorai.002G076900' => 'gra', 'Gorai.002G077000' => 'gra', 'Gorai.005G205700' => 'gra', 'Gorai.005G205800' => 'gra', 'Gorai.005G205900' => 'gra', 'Gorai.005G206000' => 'gra', 'Gorai.005G206100' => 'gra', 'Gorai.009G430300' => 'gra', 'Gorai.013G165700' => 'gra', 'GSVIVG01014446001' => 'vvi', 'GSVIVG01029994001' => 'vvi', 'GSVIVG01029998001' => 'vvi', 'GSVIVG01030001001' => 'vvi', 'HanXRQChr06g0171031' => 'han', 'HanXRQChr06g0171041' => 'han', 'HanXRQChr06g0171051' => 'han', 'HanXRQChr06g0171071' => 'han', 'HanXRQChr06g0171091' => 'han', 'HanXRQChr17g0542231' => 'han', 'HanXRQChr17g0542261' => 'han', 'HanXRQChr17g0542271' => 'han', 'HanXRQChr17g0542291' => 'han', 'HanXRQChr17g0542311' => 'han', 'HanXRQChr17g0542321' => 'han', 'HanXRQChr17g0555331' => 'han', 'Haze_09536' => 'cav', 'Haze_09537' => 'cav', 'Haze_09538' => 'cav', 'Haze_13074' => 'cav', 'Haze_13075' => 'cav', 'Haze_13076' => 'cav', 'Haze_13077' => 'cav', 'Haze_13078' => 'cav', 'Hma1.2p1_0565F.1_g179640' => 'hma', 'Hma1.2p1_0662F.1_g198300' => 'hma', 'Hma1.2p1_0662F.1_g198305' => 'hma', 'Hma1.2p1_0662F.1_g198310' => 'hma', 'Hma1.2p1_0662F.1_g198340' => 'hma', 'HPP92_009403' => 'vpl', 'Hund23369' => 'sun', 'Lalb_Chr01g0017081' => 'lal', 'Lalb_Chr01g0017091' => 'lal', 'Lalb_Chr03g0029121' => 'lal', 'Lalb_Chr03g0029131' => 'lal', 'Lalb_Chr14g0366581' => 'lal', 'Lalb_Chr14g0366591' => 'lal', 'Lalb_Chr14g0366601' => 'lal', 'Lalb_Chr19g0135521' => 'lal', 'Lalb_Chr19g0135531' => 'lal', 'Lalb_Chr22g0356321' => 'lal', 'Lalb_Chr24g0399811' => 'lal', 'Lj3g0005442' => 'lja', 'Lj3g0008076' => 'lja', 'Lj3g0009849' => 'lja', 'Lj3g0014455' => 'lja', 'Lj3g0027486' => 'lja', 'Lj3g0027920' => 'lja', 'Lsat_1_v5_gn_3_40481' => 'lsa', 'Lsat_1_v5_gn_3_40521' => 'lsa', 'Lsat_1_v5_gn_3_40581' => 'lsa', 'Lsat_1_v5_gn_5_6700' => 'lsa', 'Manes.03G117300' => 'mes', 'Manes.12G082300' => 'mes', 'Manes.12G082400' => 'mes', 'Manes.13G152101' => 'mes', 'Manes.13G152200' => 'mes', 'Manes.15G082101' => 'mes', 'Manes.15G082200' => 'mes', 'MBI02_g37326_MAGBIO' => 'mbi', 'MBI02_g37327_MAGBIO' => 'mbi', 'MBI02_g37328_MAGBIO' => 'mbi', 'MBI02_g37329_MAGBIO' => 'mbi', 'MBI02_g37330_MAGBIO' => 'mbi', 'MBI02_g37331_MAGBIO' => 'mbi', 'MBI02_g37332_MAGBIO' => 'mbi', 'MBI02_g37333_MAGBIO' => 'mbi', 'MBI02_g37334_MAGBIO' => 'mbi', 'MBI02_g41255_MAGBIO' => 'mbi', 'MBI02_g44823_MAGBIO' => 'mbi', 'MBI18_g27689_MAGBIO' => 'mbi', 'MD03G1217500' => 'mdo', 'MD09G1096800' => 'mdo', 'MD09G1096900' => 'mdo', 'MD09G1097000' => 'mdo', 'MD09G1097100' => 'mdo', 'MD11G1235200' => 'mdo', 'MD11G1235300' => 'mdo', 'MD17G1085100' => 'mdo', 'MD17G1085200' => 'mdo', 'MD17G1085300' => 'mdo', 'MD17G1085400' => 'mdo', 'Medtr2g081155' => 'mtr', 'Medtr2g089835' => 'mtr', 'Medtr2g089865' => 'mtr', 'Medtr2g089905' => 'mtr', 'Medtr2g089925' => 'mtr', 'Medtr2g089930' => 'mtr', 'Medtr2g089940' => 'mtr', 'Medtr2g089945' => 'mtr', 'Medtr2g089950' => 'mtr', 'Medtr2g089960' => 'mtr', 'Medtr2g089965' => 'mtr', 'Medtr2g089970' => 'mtr', 'Medtr2g089985' => 'mtr', 'Medtr2g089990' => 'mtr', 'Medtr2g481150' => 'mtr', 'Medtr2g481160' => 'mtr', 'Medtr4g045990' => 'mtr', 'MELO3C016562.2' => 'cme', 'MELO3C018766.2' => 'cme', 'MELO3C018767.2' => 'cme', 'MELO3C018768.2' => 'cme', 'MELO3C018769.2' => 'cme', 'MELO3C018770.2' => 'cme', 'Migut.H01898' => 'egut', 'Migut.H01899' => 'egut', 'Migut.M01846' => 'egut', 'MSTRG.12928' => 'ama', 'MSTRG.12931' => 'ama', 'MSTRG.12933' => 'ama', 'MSTRG.15193' => 'ama', 'MSTRG.15199' => 'ama', 'MSTRG.6856' => 'ama', 'Nitab4.5_0000207g0330' => 'nta', 'Nitab4.5_0000297g0170' => 'nta', 'Nitab4.5_0000769g0010' => 'nta', 'Nitab4.5_0000769g0030' => 'nta', 'Nitab4.5_0000769g0050' => 'nta', 'Nitab4.5_0001252g0080' => 'nta', 'Nitab4.5_0001320g0040' => 'nta', 'Nitab4.5_0001386g0050' => 'nta', 'Nitab4.5_0002791g0060' => 'nta', 'Nitab4.5_0002791g0070' => 'nta', 'Nitab4.5_0005672g0030' => 'nta', 'Nitab4.5_0005672g0040' => 'nta', 'Nitab4.5_0005672g0080' => 'nta', 'Nitab4.5_0007263g0010' => 'nta', 'Nitab4.5_0007263g0020' => 'nta', 'Nitab4.5_0011050g0010' => 'nta', 'Nitab4.5_0012449g0010' => 'nta', 'Nn1g00001' => 'nnu', 'Nn1g00002' => 'nnu', 'Nn1g00003' => 'nnu', 'Nn1g03864' => 'nnu', 'Nn1g06791' => 'nnu', 'Nn1g06793' => 'nnu', 'Nn1g07821' => 'nnu', 'Nn1g07822' => 'nnu', 'Nn1g07823' => 'nnu', 'Nn1g07824' => 'nnu', 'Nn1g07825' => 'nnu', 'Nn1g07826' => 'nnu', 'Nn1g07827' => 'nnu', 'Nn1g07828' => 'nnu', 'Nn1g07829' => 'nnu', 'Nn1g07830' => 'nnu', 'Nn1g07831' => 'nnu', 'Nn1g07832' => 'nnu', 'Nn1g07833' => 'nnu', 'Nn1g07834' => 'nnu', 'Nn1g07835' => 'nnu', 'Nn1g07836' => 'nnu', 'Nn1g07837' => 'nnu', 'Nn3g19950' => 'nnu', 'Nn3g19951' => 'nnu', 'Nn3g19953' => 'nnu', 'Nn5g28368' => 'nnu', 'Oeu006768.1' => 'oeu', 'Oeu014597.1' => 'oeu', 'Oeu015860.2' => 'oeu', 'Oeu017615.1' => 'oeu', 'Oeu017617.1' => 'oeu', 'Oeu017618.1' => 'oeu', 'Oeu017619.1' => 'oeu', 'Oeu026616.1' => 'oeu', 'Oeu042017.1' => 'oeu', 'Oeu046193.1' => 'oeu', 'Oeu046194.1' => 'oeu', 'Os02g0160900' => 'osa', 'Os04g0635000' => 'osa', 'Os04g0635100' => 'osa', 'Os04g0635500' => 'osa', 'Os06g0683700' => 'osa', 'Os08g0178500' => 'osa', 'Peaxi162Scf00000g00766' => 'pax', 'Peaxi162Scf00007g02519' => 'pax', 'Peaxi162Scf00007g02541' => 'pax', 'Peaxi162Scf00181g00004' => 'pax', 'Peaxi162Scf01216g00007' => 'pax', 'PGR031G1434' => 'pgr', 'PGR031G3714' => 'pgr', 'PGR142G0205' => 'pgr', 'PGR142G1549' => 'pgr', 'PGR142G2454' => 'pgr', 'PGSC0003DMG400018375' => 'stu', 'PGSC0003DMG400018377' => 'stu', 'PGSC0003DMG400018378' => 'stu', 'PGSC0003DMG400018379' => 'stu', 'PGSC0003DMG400018395' => 'stu', 'PGSC0003DMG400018396' => 'stu', 'PGSC0003DMG400018397' => 'stu', 'PGSC0003DMG400018398' => 'stu', 'PGSC0003DMG400018399' => 'stu', 'PGSC0003DMG400018400' => 'stu', 'PGSC0003DMG400019028' => 'stu', 'PGSC0003DMG400019245' => 'stu', 'Phvul.005G087300' => 'pvu', 'Phvul.005G087318' => 'pvu', 'Phvul.005G108000' => 'pvu', 'Phvul.005G108100' => 'pvu', 'Phvul.005G108200' => 'pvu', 'Phvul.005G108300' => 'pvu', 'Phvul.005G108400' => 'pvu', 'Phvul.011G110800' => 'pvu', 'Phvul.011G110900' => 'pvu', 'Potri.001G408300' => 'ptr', 'Potri.001G408400' => 'ptr', 'Potri.011G126000' => 'ptr', 'Potri.013G147900' => 'ptr', 'Potri.013G148000' => 'ptr', 'Potri.013G148100' => 'ptr', 'Potri.019G116500' => 'ptr', 'Potri.019G116600' => 'ptr', 'Potri.019G116700' => 'ptr', 'Potri.019G116800' => 'ptr', 'Potri.019G116866' => 'ptr', 'Potri.019G116932' => 'ptr', 'Potri.019G117100' => 'ptr', 'Potri.019G117200' => 'ptr', 'Potri.019G117201' => 'ptr', 'Potri.019G117301' => 'ptr', 'Potri.019G117402' => 'ptr', 'Potri.019G117500' => 'ptr', 'Potri.019G117566' => 'ptr', 'Potri.019G117632' => 'ptr', 'Potri.019G117700' => 'ptr', 'Prupe.3G228900' => 'ppe', 'Prupe.3G229000' => 'ppe', 'Prupe.3G229300' => 'ppe', 'Prupe.3G229400' => 'ppe', 'Prupe.3G229500' => 'ppe', 'Prupe.3G229700' => 'ppe', 'Prupe.3G229800' => 'ppe', 'Prupe.3G229900' => 'ppe', 'Prupe.3G230000' => 'ppe', 'Prupe.3G230100' => 'ppe', 'Prupe.4G191800' => 'ppe', 'Psat5g247240' => 'psa', 'Psat5g247320' => 'psa', 'Psat5g268280' => 'psa', 'Psat5g268320' => 'psa', 'Psat5g268400' => 'psa', 'Psat5g268680' => 'psa', 'Psat5g268720' => 'psa', 'Psat5g268760' => 'psa', 'Psat5g269160' => 'psa', 'Psat5g269200' => 'psa', 'Psat5g269400' => 'psa', 'PSO017G0164' => 'pso', 'PSO017G2146' => 'pso', 'PSO017G2687' => 'pso', 'PSO017G2866' => 'pso', 'PSO017G3534' => 'pso', 'PSO017G4155' => 'pso', 'PSO017G5540' => 'pso', 'PSO017G5676' => 'pso', 'PSO017G6080' => 'pso', 'PSO017G6624' => 'pso', 'PSO210G2284' => 'pso', 'PSO389G0001' => 'pso', 'PSO675G1048' => 'pso', 'PSO675G1329' => 'pso', 'PSO675G1775' => 'pso', 'PSO675G6431' => 'pso', 'PSO832G1718' => 'pso', 'QL04p084602' => 'qlo', 'QL04p084648' => 'qlo', 'QL08p017341' => 'qlo', 'QL08p017345' => 'qlo', 'QL08p017355' => 'qlo', 'QL08p017373' => 'qlo', 'QL08p017375' => 'qlo', 'QL08p017381' => 'qlo', 'QL08p017396' => 'qlo', 'QL08p017409' => 'qlo', 'QL08p017428' => 'qlo', 'QL08p017440' => 'qlo', 'QL08p037071' => 'qlo', 'QL08p037074' => 'qlo', 'QL08p037077' => 'qlo', 'QL08p037097' => 'qlo', 'RcHm_v2.0_Chr2g0161421' => 'rch', 'RcHm_v2.0_Chr2g0161441' => 'rch', 'RcHm_v2.0_Chr2g0161451' => 'rch', 'RcHm_v2.0_Chr2g0161461' => 'rch', 'RcHm_v2.0_Chr2g0161481' => 'rch', 'RcHm_v2.0_Chr2g0161491' => 'rch', 'RcHm_v2.0_Chr2g0161501' => 'rch', 'RcHm_v2.0_Chr2g0161511' => 'rch', 'RcHm_v2.0_Chr5g0036191' => 'rch', 'Rhsim04G0062800' => 'rsi', 'Rhsim04G0062900' => 'rsi', 'Rhsim06G0152500' => 'rsi', 'Rhsim06G0152600' => 'rsi', 'Rhsim06G0152700' => 'rsi', 'Rhsim06G0152900' => 'rsi', 'Rhsim06G0192300' => 'rsi', 'Sabra13G0119500' => 'sbr', 'Sabra13G0119600' => 'sbr', 'Sabra15G0043500' => 'sbr', 'Sabra15G0044800' => 'sbr', 'Sabra15G0045700' => 'sbr', 'Sabra19G0117500' => 'sbr', 'Sabra19G0117600' => 'sbr', 'Sabra19G0117700' => 'sbr', 'Sabra19G0117800' => 'sbr', 'Sabra19G0117900' => 'sbr', 'Sabra19G0118000' => 'sbr', 'Sabra19G0118100' => 'sbr', 'Sabra19G0135500' => 'sbr', 'Sabra19G0135600' => 'sbr', 'Sabra19G0135700' => 'sbr', 'Sabra19G0135900' => 'sbr', 'Sabra19G0136000' => 'sbr', 'Sabra19G0136100' => 'sbr', 'Sabra19G0136200' => 'sbr', 'SalBow7G0101' => 'sbo', 'SalBow7G1173' => 'sbo', 'SalBow7G2806' => 'sbo', 'Sc03g0009540' => 'sci', 'Sc12g0002700' => 'sci', 'Sc12g0003950' => 'sci', 'Sc16g0006720' => 'sci', 'Sed0008519' => 'sed', 'Sed0023804' => 'sed', 'Sed0025308' => 'sed', 'SGA_v2.0_scaffold34G13707' => 'sas', 'SGA_v2.0_scaffold34G13913' => 'sas', 'SGA_v2.0_scaffold9G04959' => 'sas', 'Solyc07g054750.1' => 'sly', 'Solyc07g054760.1' => 'sly', 'Solyc07g054770.1' => 'sly', 'Solyc07g054780.1' => 'sly', 'Solyc07g054790.1' => 'sly', 'Solyc07g054800.1' => 'sly', 'Solyc07g063640.1' => 'sly', 'Sopen07g028680' => 'spe', 'Sopen07g028690' => 'spe', 'Sopen07g028700' => 'spe', 'Sopen07g028710' => 'spe', 'Sopen07g028720' => 'spe', 'Sopen07g031820' => 'spe', 'Sp1g28760' => 'spa', 'Sp6g07160' => 'spa', 'Sp6g07170' => 'spa', 'TAR626G1434' => 'tar', 'TAR627G0264' => 'tar', 'TAR627G0348' => 'tar', 'TAR627G0398' => 'tar', 'TAR627G0747' => 'tar', 'TAR627G1040' => 'tar', 'TAR629G0014' => 'tar', 'TAR629G0738' => 'tar', 'TAR629G3265' => 'tar', 'THA.LOC104806479' => 'tha', 'THA.LOC104813078' => 'tha', 'THA.LOC104815653' => 'tha', 'Thecc.02G170700' => 'tca', 'Thecc.02G170800' => 'tca', 'Thecc.02G171000' => 'tca', 'Thecc.07G069400' => 'tca', 'Thecc.07G069500' => 'tca', 'Thecc.07G069600' => 'tca', 'Thecc.07G069800' => 'tca', 'Thecc.07G069900' => 'tca', 'Thecc.07G070000' => 'tca', 'Thhalv10009208m.g' => 'esa', 'Thhalv10009214m.g' => 'esa', 'Thhalv10009215m.g' => 'esa', 'TPR.G11007' => 'tpr', 'TPR.G18048' => 'tpr', 'TPR.G18049' => 'tpr', 'TPR.G18052' => 'tpr', 'TPR.G18055' => 'tpr', 'TPR.G18062' => 'tpr', 'TPR.G18070' => 'tpr', 'TPR.G19371' => 'tpr', 'TPR.G4003' => 'tpr', 'TPR.G40494' => 'tpr', 'TPR.G705' => 'tpr', 'TPR.G8687' => 'tpr', 'TWI36G0282' => 'twi', 'TWI36G1218' => 'twi', 'TWI38G1339' => 'twi', 'TWI75G0017' => 'twi', 'unitig_0.g2052' => 'ugi', 'unitig_37.g12579' => 'ugi', 'unitig_37.g12580' => 'ugi', 'unitig_899.g15308' => 'ugi', 'unitig_899.g15309' => 'ugi', 'unitig_899.g15310' => 'ugi', 'vmacro11807' => 'vma', 'vmacro12258' => 'vma', 'vmacro12259' => 'vma', 'vmacro12260' => 'vma', 'Zm00001eb069310' => 'zma', 'Zm00001eb069320' => 'zma', 'Zm00001eb069330' => 'zma', 'Zm00001eb207660' => 'zma', 'Zm00001eb225440' => 'zma' ) $gf_id = 'HOM05D000831' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000831' ) $data_identifier = 'HOM05D000831' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 9, 'aar' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 7, 'aly' => (int) 4, 'aox' => (int) 1, 'arhy' => (int) 5, 'ath' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 6, 'bca' => (int) 14, 'bol' => (int) 6, 'bra' => (int) 8, 'can' => (int) 17, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 7, 'cfa' => (int) 10, 'ccl' => (int) 9, 'cil' => (int) 13, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 8, 'csa' => (int) 4, 'camsi' => (int) 17, 'dca' => (int) 7, 'din' => (int) 3, 'dzi' => (int) 14, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 9, 'fan' => (int) 11, 'fve' => (int) 5, 'gma' => (int) 30, 'ghi' => (int) 17, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 8, 'hma' => (int) 5, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 6, 'lsa' => (int) 4, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 11, 'mtr' => (int) 17, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 27, 'oeu' => (int) 11, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 12, 'pvu' => (int) 9, 'ptr' => (int) 21, 'ppe' => (int) 11, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 7, 'sbr' => (int) 19, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 3, 'sas' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 9, 'tha' => (int) 3, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 6, 'vma' => (int) 4, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb225440' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1